TAP2 allele-specific oligonucleotides

These ASOs each detect one of the 45 SNPs and two indels in TAP2.

SNP sites T1-T45 are each analysed using the two different ASOs (e.g. site T1 is genotyped using ASOs TA1G and TA1T.

Sites T20 and T29 each contain two SNPs separated by 1 bp. The polymorphic base is indicated in red.

See TAP2 sequence and SNPs for the location of each SNP.

ASOs:

TA1G 5' CCAGCCTGGCCAACATGG 3' located in an Alu element, also shows a perfect match to positions 2482-2499 in

a second Alu element

TA1T 5' CCAGCCTTGCCAACATGG 3'

TA2C 5' AAGATGGCGCCACTGCAT 3'

TA2T 5' AAGATGGTGCCACTGCAT 3'

TA3T 5' CTGTGTGTTCCATTGTTA 3'

TA3C 5' CTGTGTGCTCCATTGTTA 3'

TA4T 5' CTCTGGGTCAGGAAGGAT 3'

TA4A 5' CTCTGGGACAGGAAGGAT 3'

TA5G 5' AATTACTGTTCTAAACAG 3'

TA5A 5' AATTACTATTCTAAACAG 3'

TA6T 5' AGAACCAAAGCTCAGTAC 3'

TA6C 5' AGAACCAAAGCCCAGTAC 3'

TA7G 5' CAGTACGGGGCATTTCCC 3'

TA7C 5' CAGTACCGGGCATTTCCC 3'

TA8G 5' CCGCCTCGGCCTCCCAAA 3'

TA8A 5' CCGCCTCAGCCTCCCAAA 3'

TA9A 5' ACAGATAAAGTTGCCCTT 3'

TA9C 5' ACAGATACAGTTGCCCTT 3'

TA10C 5' AAGGCCTTGGCTGGGGAA 3'

TA10T 5' AAGGCCTTGGTTGGGGAA 3'

TA11G 5' TGGGGAAGCGAAAGCGAA 3'

TA11A 5' TGGGGAAACGAAAGCGAA 3'

TA12T 5' GCAGAAGTCCCCGGAGCT 3'

TA12C 5' GCAGAAGCCCCCGGAGCT 3'

TA13G 5' CAACAGGGACGCAGCCCA 3'

TA13A 5' CAACAGGAACGCAGCCCA 3'

TA14A 5' ATAGGATAAAATGAGAAG 3'

TA14G 5' ATAGGATGAAATGAGAAG 3'

TA15G 5' GGGCCTGGGCACCAGCAC 3'

TA15C 5' GGGCCTGCGCACCAGCAC 3'

TA16G 5' GGTAGGTGGTGGGCAGCT 3'

TA16A 5' GGTAGGTAGTGGGCAGCT 3'

TA17A 5' GTCTCAGATGGAATGTCT 3'

TA17G 5' GTCTCAGGTGGAATGTCT 3'

TA18T 5' GTCACTCTCTCAGGATGG 3'

TA18C 5' GTCACTCCCTCAGGATGG 3'

TA19C 5' TCTCCCTCTCACTCTTCT 3'

TA19T 5' TCTCCCTTTCACTCTTCT 3'

TA20TAA 5' ATCTTGCTAATCCCTGAA 3'

TA20TAG 5' ATCTTGCTAGTCCCTGAA 3'

TA20CAA 5' ATCTTGCCAATCCCTGAA 3'

TA20CAG 5' ATCTTGCCAGTCCCTGAA 3'

TA21C 5' CCTTTCTCTTTCTAGACA 3'

TA21T 5' CCTTTCTTTTTCTAGACA 3'

TA22A 5' TTACCCAAATCCCAGCCG 3'

TA22G 5' TTACCCAGATCCCAGCCG 3'

TA23C 5' CTACAGTCGTGCACTGCA 3'

TA23T 5' CTACAGTTGTGCACTGCA 3'

TA24T 5' ATAACGATGTTTAGGTCA 3'

TA24A 5' ATAACGAAGTTTAGGTCA 3'

TA25C 5' GTGCAGTCATATGTTGTA 3'

TA25T 5' GTGCAGTTATATGTTGTA 3'

TA26T 5' GGAGCAATAGGCTAAACT 3'

TA26A 5' GGAGCAAAAGGCTAAACT 3'

TA27G 5' ATACAACGATGAAACCAT 3'

TA27A 5' ATACAACAATGAAACCAT 3'

TA28C 5' CATCTAACGACACATTTC 3'

TA28T 5' CATCTAATGACACATTTC 3'

TA29ATT 5' TCTGACTATTCCAAACGC 3'

TA29ATC 5' TCTGACTATCCCAAACGC 3'

TA29CTT 5' TCTGACTCTTCCAAACGC 3'

TA29CTC 5' TCTGACTCTCCCAAACGC 3'

TA30C 5' AGGATGACAGATGGGAAT 3'

TA30A 5' AGGATGAAAGATGGGAAT 3'

TA31T 5' TTGTAGTTTTCTATTGTG 3'

TA31C 5' TTGTAGTCTTCTATTGTG 3'

TA32A 5' GGCCTGGAGTCCAGGTCT 3'

TA32T 5' GGCCTGGTGTCCAGGTCT 3'

TA33A 5' CTCAGCCATTAGGGGAGA 3'

TA33G 5' CTCAGCCGTTAGGGGAGA 3'

TA34G 5' GGAGAAGGTATATTGTAG 3'

TA34A 5' GGAGAAGATATATTGTAG 3'

TA35+ 5' CTGTAAACAAAAATGTAA 3'

TA35- 5' AACTGTAAAAAATGTAAA 3'

TA36GG 5' TTGGGTAGCCATCATCAC 3'

TA36GA 5' TTGGGTAACCATCATCAC 3'

TA36TG 5' TTGGTTAGCCATCATCAC 3'

TA36TA 5' TTGGTTAACCATCATCAC 3'

TA37C 5' TGACTCCCGGTGCGGTAC 3'

TA37A 5' TGACTCCAGGTGCGGTAC 3'

TA38G 5' CATTTGCGTTGTTTCCAC 3'

TA38A 5' CATTTGCATTGTTTCCAC 3'

TA39- 5' AGACCTCAAATCATGGCG 3'

TA39+ 5' GACCTCACAATCATGGCG 3'

TA40G 5' CTTTCCTGATTCAGACAC 3'

TA40A 5' CTTTCCTAATTCAGACAC 3'

TA41G 5' CCTGCTCGTAAGGAGGGT 3'

TA41A 5' CCTGCTCATAAGGAGGGT 3'

TA42G 5' ACTTGGGGGTGCAGATGC 3'

TA42T 5' ACTTGGGTGTGCAGATGC 3'

TA43A 5' CACATGTATACATCCTGT 3'

TA43G 5' CACATGTGTACATCCTGT 3'

TA44A 5' CCCACCCATATTATTCTG 3'

TA44C 5' CCCACCCCTATTATTCTG 3'

TA45C 5' ATTTCCACTTGTGGTATC 3'

TA45T 5' ATTTCCATTTGTGGTATC 3'

Last updated: 8 September, 2005
Celia A. May
The views expressed in this document are those of the document owner, Alec J. Jeffreys.