SNP genotypes around the SHOX gene of the Xp/Yp pseudoautosomal region

 

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Table 1: 99 unrelated UK Caucasian semen donors

(NOTE: donors 1-50 have been used for the MHC projects)

All SNPs were discovered by resequencing semen donors 1, 2, 4, 5, 6, 7, & 86. Each SNP is classified by type:

* CTi: transition at a CpG doublet

* Ti: non-CpG transition

* Tv: transversion

* ID: indel

The location of each SNP is given relative to Genbank entry U82668. Genotypes of each SNP were established by ASO hybridisation of genomic PCR products and are given as single allele letters for homozygotes and H for heterozygotes. Uncertain genotypes are marked "?" and undetermined genotypes indicated with a dot.

SNP         location  type    1-10      11-20      21-30      31-40      41-50      51-60      61-70      71-80      81-90      91-99
+6/597C/T      4557  CTi  CCCCCCHCHH TCCCCCCCCC CCCCCHCCCC TCCCHHHCCH CCCCTCCHCC CCHCCHCTCC HCCCHHCCCC CCCCCCCCHC CCHCCCCCCH CCCCCCCCH
+6/1323C/G     5880  Tv   GGGGGGHGHG GGGGGGGGGG GGGGGGGGGG GGGGGHGGGG GGGGHGGGGG GGHGGGGGGG GGGGHGGGGG GGGGGGGGGG GGGGGGGGGG GGGGGGGGH
+4/165A/G     36312  CTi  AHAGAAHHHH GHGHAAHHHH HAHAAAAAAH HAHGHGGAHH AHAHHHAAHG AHGAAHHAHA HAAHHHHHGA HAHHHAHAAA HAGGAHHHAH HAGAAHHAH
+4/223C/G     36370  Tv   HGHGCHGHGH GHGHHCHGHH HCGHHHCHCG HCGGHGGHGH HHGHHHHCHG HGGHCHHHHH HGHHHHHHGC HHHHGHGCCC HCGGCHGHHH GHGCCGHHH
+4/375C/T     36522  CTi  CCCCTHCHCH CCCHCHCCCH CHCHCCCCHC CCCCCCCHCC CHCHCCCHCC CCCCHHCCCC CCCHCHHCCC CHCCCCCCCC CTCCHCCHCH CHCHCCHHC
+4/500L3/4    36649  ID   H3H34H3H3H 3H3HHHH33H 343H3HH?43 H333333H3H ??3HH33H33 H3334HH34H 333H3HHH3H 3HHH3H3H33 3433433HH3 3H3HH3HHH
+4/1063C/G    37210  Tv   HHHGGHHGHG HHGGHGHHGH HGCHHCGHGH GGHGGGGHHG HGCHGGHGGH HGGHGGGHCG GCHGGGGGGG GHHGCCHGGG GGGHGGHGHG HHHHHHGHG
+701C/T       42851  CTi  HCCHHHCCHC CHCHHHCCCC CHCCCCHHCC CCCCCHCHCC CCCCHHCCCC HCCCTCHCHC CCCCCHHCHH CCCCCHHHCC HCCCCCCCCC CCHCHCHCH
+876A/G       43026  Ti   HGGHHAGGHG GHGHHAGGGG GHGGGGAAGG G?GGHHGHGG GGGGHHHGGG HGGHAGHGHG GGHGGHHGHA GHGGGHHAHG HHGGGGGGGG HGHGAGHGH
+1096A/G      43246  Ti   HGGHHHGGHG GHGHHHGGGG GHGGGGHHGG GGGGGHGHGG GGGGHHGGGG HGGGAGHGHG GGGGGHHGHH GGGGGHHHGG HGGGGGGGGG GGHGHGHGH
+2190C/T      44340  CTi  HCCHHTCCHC CHCHHCCCCH CHCCCCCHCC CCCCHHCHCC CCCCHHHCCC HCCHTCHCHC CCHHCHHCHT CHHCCTHHHC HHCCCCCCCC HCHCHCHCH
+2378C/T      44528  CTi  TTTTHTTTTH CHTTTTHTTH CTHHHHTTHT TTTTTTHHCH TTHHTTTHTH HTTHTTTHHH TCTHTHTTTT HTHTCTTTHH THCHTHCHHH HHHHHHHHT
+2784A/G      44934  Ti   GGGGGHHGGG GGGGGHGGGG GGGGGGHHGG GAGGGGGGGG GGGGGGGGGG GGGGGGGGGG HGGGGHGGGH GGGGGGGHGH GGGGGGGGHG GGHHGGGHG
+2900A/G      45050  Ti   HGGHHHGGHG GHGHAHGGGH GHGGGGGHGG GGGGHHGHGG GGGGHHAGGG HGGGAGHGHG GGGHGGHGHH GGHGGHHHHG HHGGGGGGGG GGGGHGHGH
+3571C/T      45721  CTi  CHTHCCHHHH CCHHCCCTHC CHHHHHHCHT TCTTHHHCCH TTHHHHCCHH CHTCCTHCCH HCHCTCHTHC HHCTCCHCCC HCCCTHCCCT CHCCCHCCH
+3837C/T      45987  CTi  CCCCCCHCCC CCCCCHCCCC CCCCCCHHCC CTCCCCCCCC CCCCCCCCCC CCCCCCCCCC HCCCCCCCCC CCCCCCCHCC CCCCCCCCCC CCCHCCCHC
+3955A/G      46105  Ti   AHGHHAHHHH AAHHAAHGGA AHHHHHHAGG GAGGHHHAAH GGHHHHAAGH AHGHAGHHAH HAGHGAHGHA HGAGAHHAAA HAAAGHAAAG HHAAHHAAH
+3983A/G      46133  CTi  GHAHHGHGHH GGHHGGGAHG GHHHGHHGAA AGAAHHHGGH AAHHHHGGHH GHAGGAHGGH HGHGAGHAHG HHGAGGHGGG HGGGAHGGGA GHGGHHGGH
+3990A/T      46140  Tv   AHTHHAHHHH AAHHAAATHA AHHHAHHATT TATTHHHAAH TTHHHHAAHH AHTAATHAAH HAHATAHTHA HHATAAHAAA HAAATHAAAT AHAAHHAAH
+5053C/G      47203  Tv   HCHGCCHHGH CCCHHHHGHC CCHHCHCCGC CCCHCCHHCC CHCCHHHHHC HCCCHCHCCH CCCCHCHCCH CCCCCHHCHC CCCHCCHCCC CGHHHHCCC
+5683C/T      47833  Ti   THHCHHTTCC THC?THCHTT HTTHCCHCTH TT?T?CTTT? TTTTCHHCTH HCTHTHHTTH CHHTCTHTHC CHHHCHHTHH TCTHHHHHCT HTHHHHHHH
+6085C/T      48235  Ti   HHHCCCCCCC HCHHCHCCCC CTHCCTCHCT HCHTHCTCHH ???HCCHCCH HC?CCHCHCT CHCCCCHCHC HHCHHHCCCC CCCCCHHHCC TCCCCCHHC
+6139A/G      48289  CTi  GGHHGGHGAH HHAAHAGHAG GAAGAAGGGG GHGGGGAHHH GHGGGHHHAH HHHGGGHHHA HAAGGHHHHH GAGHHHHHAG HGHGGGAHHG AHHHHAGHG
+6195C/T      48345  Ti   CCHHHCHCHH CCCCCCCHCC CCCHHCHHHC CCCCCHCCCH CCCCHHCCCC CHCCCHCHCC HCHCHCHCCC CCHCCCCCTH CHCCCCCHCC CCCHHCCCH
+6211C/T      48361  Ti   CCCCCHCCCC CCCCCCCHCC CCCCCCHCCH CCHCHCCCCC CCHCCCCHCH CCCCCCCHCC CCCHHCCCCC CCCCCHCCCC CCCCCCCCCC CCHCCCCCC
+6236C/G      48386  Tv   CHHHCCCCCC CCCCHCCHHC CCHCHCHCGH CHHCHCCCHC HHHHCHGHHC CCCCGCHCCC CHCGCHCHCC CHCHCHCHCH CCCCHCGCHC CGHCHCCCG
+6260A/C      48410  Tv   CCHHCCCCHC CHCCHCAHHC CCHCHCCCHC CCCCCCCCCC CHCCCHHHHC CCCCCCCCCC CHCCCCCCCC CHCHCCCCCC CCCCCCHCHC CHCCHCCCH
+6485A/C      48625  Tv   AHCCCCHAHC CAC?HHACCH HCCHCCHCCH CCHHCHCCCC CHCHCCCCCC CCHACHHCCC CHCCCHCCHH CCHCCHHCCH CCCACACCCH CCHHCCHHC
+6630G/T      48770  Tv   TTTTHHTTTT HTHHTTTTTH TTTTTHTTTT HTTTTTHTTT TTTTTTTTTT HTTTTTTTHH TTTTTTTTTT THHHHTTTTT THHTGTTTTT TTTTTTHTT
+7445C/G      49585  Tv   CHCCCCCCCC CCCCCCCCHC CCCCCCHCCH CHHCCCCCCC CCCHCHCCHC CCCCHCHCCC CCCHCHCCCC CCCCCHCHCC CCCCHCCHHC CCCCCCCCH
+7982A/C      50132  Tv   AHHAAAAAAA AAAAAAAAHA AAAAAAHAHH AHHHAAAAHA HAAHAAAAHA AAAACAHAAA AHACAAAHAA AAAHAHAHAA HAAAHAAHAA AAAAAAAAH
+8965C/G      51115  Tv   GGGGGHGGGG GGHHGHGGHG GHHGGHGCGH HHHGHGCHHH GGGGHGHHHH GGCGGGGGHH HGHGGGHHGH HGGGHGHGGH HGHGGGHGHG CHHHHCGHG
+9177C/T      51327  CTi  CHCCCCCCCC CCCCCC?C?C CCCHCCHCCC CHCCCCCCCC CCCHCCCCHC CCCCCCHCCC CCCHCCCCCC CCHCCHCHCC CCCCHCCHCC CCCCCCCCC
+9595C/T      51745  CTi  CCTTHCHCHH CCHHCCHTCC HCHCTHCCTH CCHCHCCHHC THHCHTCHCH CTCCHHCTCH HHHHTCHHHC HHCTCCCHTC HHCCCCHHHH CHCCCCCCH
+9697G/T      51847  Tv   GHGGGHGGGH HGHHGHHGTG GTHHGHHTGH HTHGHGTHHH GGHHHGHHTH GGTGGGHGHH HGHHGHHHGH HHHGHHHHGH HGHGHGHHHG THHHTTGHG
+3/341A/T     61494  Tv   HHH?HTTTTH HTHHTTHTHT HATTHTTTTT HHTTTTAAAT HTTHHHHTHT TTHHTTTTTH HHHATTHHHH AHHHTHTHTT AATHHTHTTT HHHHTATHT
+3/663C/G     61817  Tv   CCHGCGHHHH HCCHHHHGCC HHGHHGHGCC CCCCGHHCHH HCHCHHHHCG CHCCCH?HCH HHCCHCHCCC HHCHHHH?HC CCCHHCHGHH HHCHCCHCH
+3/849C/T     62003  CTi  TTTTTHHTHT TTTHTTTTTT THTTTTTTTT TTTTTTTTTT TTTTTTTTTH THTTTTTTTH TTTTTTTTTT THTHTTTTTT TTTTTTTHTT THTTTTTTT
+3/1035A/G    62189  Ti   GHA?HHGHGH GGGGHGHGGG HGAGAGGGGG GGGGAHGHAH HGHHHHHHGG GGGGGH?GGG HHGHHGHGGG HGGHGGHGHG GHGHGGHHHH HGGGGG?GG
+3/1239C/G    62393  Tv   GHG?HGHHHG HCHGHHGGHC HGGGGHGGHH ?HHCHHGGGH GCHHGGGHHG CHHGHH?GHH ??HGHHGHHH GGH?HGHGGC HHCGHCGHHH ??HHC?HHH
+3/1248A/G    62401  CTi  GAGGHAHAHG HAHGHHGHHA AGHGGAHAHA GHAAHAHGHH GAHAHGGAHH AHHHHHGGHH GHHGHHGHHH HGHGAGAGGA HHAHHAHHAH GGHHAGAHA
+35/1652C/G   62931  Tv   HHCCHCHHHC HGHCHHCGGG HCHCCHHGHG HHGHGCHHCC HGHHCHCHGH GHHHHHCHHH HHHHHHCGHH CCHCHCHCCG HHGHHGGHHH HHHGGHHCH
+35/2287A/G   63568  CTi  HHHHCCHCCH CCCCHCACCC CCCCHACCCH CHHCCHHHHH HCHHCHACCA HCCCCCHHCC CCCHHHHCCC CCCHACHCHC CHCHCHCHCH HHCCCHCCC
+35/2637A/G   63917  CTi  HHHHAAGHHH GHAGGAGGGG HAGAGGHGHG GHGAAHHGGH GHGHAGGAGG GHGHHAHHAH AGAGHHHGHA AHHGGAHAGA AHHHHHHGHH HGHGHGAAG
+35/3390C/G   64671  Tv   GGGGGGCGGG HGGGHGCGHG GGGHGGGCGG HCGGGHGGGG CGGGGCGGHG GGGGGGGHGG GGHHGGG?GG GGGG?GGHGG GGGHGGGHHG GGHHGCGGG
+35/4673A/G   65954  Ti   GHGHAHGHAA HAAHGHGHHA AAHHAG?GAG HGGAAGGHHA GHAHHGGAHH AAHAHHAGHH AAHHAAG?AA HHHGAAAHGA HAAG?HHGHG AHGHAGAAA
+35/6219C/T   67500  Ti   HHHHTHTHTH TTTCCHTTHH TTCTCCCT?? HTHTTT?HHH THTHHTCTHC HHHTCHHHHH CCTHTTTTHC HTHTHTHTHT H?HHCHCTTT HHTTHCTHH
+35/6445C/T   67725  CTi  THTHTTHTTH TTTTCHHTTT TTTTTTHTTH TTHTTTHTTT HTHTTHCTTH TTTTHTTTTH HCTTHTHTTH TTTTTTTTHT HTTTTTHHTH TTTTTCTTT
+35/6978A/G   68259  Ti   HAHAAAAHAH AAAGAAAAHH AAHAAHHAAA AAAAAAAHHA AAAAHAAAHA AAAAAHHHHA HAAAAAAAHH HAHAAAHAAA AAHGAHAHHA AHAAHAAHA
+5/507A/G     69507  Ti   GGGGGHGGGH GGGAGGGGHH GGHGAHGGHG HGGGGGGHHH GHGHGGGGHH HHGHHGHGGG HGGHGGGGHH GGGGHHHGGG GHHGHGHGGG HHGGHGGHH
+5/772G/T     69772  Tv   GGGGGGHGGG HGGGGGHGHH GGHHHGGTHG HHGGGHHGHG HTGGGHGGHG GHGGGGGHGG GGGHGGHHGG GGGHGGGHGG GGHHHGHTGH GGHTHGGGH
+5/934A/C     69935  Tv   HCAHCHAHCA HCCAAHACAH CCAHAHAAHH HHHCCHAAAH AAHHHAACAA HHCHAHHAHH AACAHHAHHA HCHAHHHHHC HHHAACAACA AAHHHACHH
+35/375A/G    71375  CTi  GGGGGAHGGH HGHHGGGAGG HGGHHHGHGG GGGGAGHGHG GGGGHGHHGG GGGGGHHGGG HAHGGGGGHH HGGGGHGGGG GGGGGHGGHG GHGGGGGGG
+35/520C/T    71520  Ti   TTTTTCHHTH HTHHTTTCTT HTTHHHTHTT TTTTCTHTHT TTTTHTHHTT TTTTTHTTTT HCHTTTTTHH HTTTTHTTTT THTTTHTTHT TTTTTTTTT
+35/801C/T    71801  CTi  CCCCCCHHCH HCCHCCCHCC HCCHCCCHCC CCCCCCHCCC CCCCHCCCCC CCCCCCHCCC HHCCCCCCCH HCCCCHCCHC CCCCCCCCHC CHCCCCCCC
+35/939A/G    71939  CTi  GGGHAGGGAG HAHGGHHGHG GAHHGGAGHH AAHHGGHGGG GGGGGHGHHG GHAAHGHHHA HGHHHHGHHG GAGHHHHAGA HHHHGHGGHG GGAHHHAHH
+35/151A/G    72151  CTi  GGGGGGHHGH HGGHGGGHGG HGGHGGGHGG GGGGGGHGGG GGGGHGGGGG GGGGGGHGGG HHGGGGGGGH HGGGGGGGHG GGGGGGGGHG GHGGGGGGG
+35/329A/G    72329  CTi  HHGHGGHHGH GGGGAHHGGG GGGGHGGHGH GGHGGHGHHG AAHGGGHGGH GHGGGGGGGG GGGGHGAGGH GGGHGGGGHG GGGHHGHAGA GGGGGHGHG
+7/1400C/T    78440  CTi  CCCTHTHHTT HHHTTHCHCH HHTTHTTTTH CTHCTHHCHH CHCTTHHHCH H?TTTCHCHC HHTHHTHTHC TTHCCTCHTH CHCCHTHHHH THHHTHHTT
+7/1593C/T    78633  CTi  CHCCHCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCHCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCC
+7/1985A/G    79025  Ti   GGGGHAGGGG GGGHHHGGGG GGHGGHHGGG GGGGHGGGHG GGGGGGHGGG GGHGHGGGGG GGHGHHGHGG HHGGGGGGHG GGGGGHGGGG GGHGHGGHH



Table 2:  40 unrelated Saami  (see Sajantila et al 1995)

SNP        location  type    S1-10     S11-20     S21-30     S31-40
+6/597C/T      4557  CTi  .......... .......... .......... ..........
+6/1323C/G     5880  Tv   .......... .......... .......... ..........
+4/165A/G     36312  CTi  .......... .......... .......... ..........
+4/223C/G     36370  Tv   .......... .......... .......... ..........
+4/375C/T     36522  CTi  .......... .......... .......... ..........
+4/500L3/4    36649  ID   .......... .......... .......... ..........
+4/1063C/G    37210  Tv   .......... .......... .......... ..........
+701C/T       42851  CTi  CCHHCCCCCC HCCHHCHCCT ??HHCC?HCC CCCCCC?HCC
+876A/G       43026  Ti   HGHHGGGGGG HGHHHGHGGA ??AAGG?HHH GGGGHG?HHG
+1096A/G      43246  Ti   GGHHGGGGGG HGGA?GA??A ??HHGG?AGG GG?GGG?H??
+2190C/T      44340  CTi  ?CHHCCCCCC HCCHHC???? H?HTCC?HCC CHHCCC?H??
+2378C/T      44528  CTi  HHTHHHHCTT HTHTTHTCCT HTTTHH?THH HTHTHCTH?C
+2784A/G      44934  Ti   ?HGGGGGGHG GHHGHGGGGH GAAGGGGGHH GGGGHHHGGG
+2900A/G      45050  Ti   ?GHHGGGHGG HGHHGGHGGH H?GHGGGHHG GGGGGGGHHG
+3571C/T      45721  CTi  HCCCHHCCHT CHHCHHHCCH CTHCCCHHHH CHHTHCTCCH
+3837C/T      45987  CTi  CHCCCCCCHC CHCCCCCCCC CCCCCCCCCC CCCCCCCCCC
+3955A/G      46105  Ti   HAHHHHHAHG AHHHHHHAAH AGHHHHHHHH HGHGHAGAAH
+3983A/G      46133  CTi  HGHHHHHGHA GHHHHHHGGH GAHHHHHHHH HAHAHGAGGH
+3990A/T      46140  Tv   HAHHHHHAHT AHHHHHHAAH ATHHHHHHHH HTHTHATAAH
+5053C/G      47203  Tv   CCCCGCHCCC HCCHCCCCCC CCCCHHCCCH GHGCHCCCHC
+5683C/T      47833  Ti   HHHHCCHHCT THHCHHCTTH HCHHTTTCHC HHCCCTCCHT
+6085C/T      48235  Ti   HCHCCHHCCC CCHCCCHHCH CTHTTTHTHH HTCTHCTCCH
+6139A/G      48289  CTi  HGHG?HHGGG GHHGGHHHGH GAHHAAAHHH HAHAHGAGGH
+6195C/T      48345  Ti   CHHCHCCCHC CHCCCCCCCC CCCCCCCCCC CCHCCCCCCC
+6211C/T      48361  Ti   CCCCCCCCCC HCCCCCCCCC CCCCCCCCCC CCCCCCCCCC
+6236C/G      48386  Tv   CCCHCCCCCH HCCCHCCCCC CCCCCCCCCC CCCCCCCCCC
+6260A/C      48410  Tv   .......... .......... .......... ..........
+6485A/C      48625  Tv   AHHHHAAAHH HCAHHHCHAA AAACHHCHAA AHHHAAAHAA
+6630G/T      48770  Tv   ?GGGGGGGGG GGGGGG???? ??GGGG?GGG ?GGGGG????
+7445C/G      49585  Tv   CCCHCCCCCC HCCCCCCCCC CCCCCCCCCC CCCCCCCCCC
+7982A/C      50132  Tv   AAAHAAAAAH HAAAHAAAAA AAAAAAAAAA AAAAAAAAAA
+8965C/G      51115  Tv   HHGGGGGGHG GCGHGHCHGG HHGCHHHHGH HHGHGGGHGG
+9177C/T      51327  CTi  CCCHCCCCCC HCCCCCCCCC CCCCCCCCCC CCCCCCCCCC
+9595C/T      51745  CTi  HCHCHCCCCH CCCHHCCCCH HHCCCCHCCH ?CHCCCCCCC
+9697G/T      51847  Tv   HHGHGGGGHG HHG?GHTHGG HHGTHHHHGH GHGHGGGHG?
+3/341A/T     61494  Tv   .......... .......... .......... ..........
+3/663C/G     61817  Tv   .......... .......... .......... ..........
+3/849C/T     62003  CTi  .......... .......... .......... ..........
+3/1035A/G    62189  Ti   .......... .......... .......... ..........
+3/1239C/G    62393  Tv   .......... .......... .......... ..........
+3/1248A/G    62401  CTi  .......... .......... .......... ..........
+35/1652C/G   62931  Tv   .......... .......... .......... ..........
+35/2287A/G   63568  CTi  .......... .......... .......... ..........
+35/2637A/G   63917  CTi  .......... .......... .......... ..........
+35/3390C/G   64671  Tv   .......... .......... .......... ..........
+35/4673A/G   65954  Ti   .......... .......... .......... ..........
+35/6219C/T   67500  Ti   .......... .......... .......... ..........
+35/6445C/T   67725  CTi  .......... .......... .......... ..........
+35/6978A/G   68259  Ti   .......... .......... .......... ..........
+5/507A/G     69507  Ti   .......... .......... .......... ..........
+5/772G/T     69772  Tv   .......... .......... .......... ..........
+5/934A/C     69935  Tv   .......... .......... .......... ..........
+35/375A/G    71375  CTi  .......... .......... .......... ..........
+35/520C/T    71520  Ti   .......... .......... .......... ..........
+35/801C/T    71801  CTi  .......... .......... .......... ..........
+35/939A/G    71939  CTi  .......... .......... .......... ..........
+35/151A/G    72151  CTi  .......... .......... .......... ..........
+35/329A/G    72329  CTi  .......... .......... .......... ..........
+7/1400C/T    78440  CTi  .......... .......... .......... ..........
+7/1593C/T    78633  CTi  .......... .......... .......... ..........
+7/1985A/G    79025  Ti   .......... .......... ..........  ..........



Table 3:  35 Vlax Romani (Kalderas & Lom - see Kalaydjieva et al 2001)

SNP        location  type   B1-10     B11-20     B21-30    B31-35
+6/597C/T      4557  CTi  CHCHHCHHHC HHCCHCCCCC CHCCHTCCHH HCCTC
+6/1323C/G     5880  Tv   GGGGGGGHHG GGGGHGGGGG GGGGGHGGGG GGGGG
+4/165A/G     36312  CTi  AAAAHHAHGH AAAAGHHAAH AAHAAGAAHH AAAHH
+4/223C/G     36370  Tv   HCHCHGCHGH CHCHGHGCCH CCHCC?HGHH HHCHH
+4/375C/T     36522  CTi  HCCHHCCHCH HCHCCHCTCC TCCCCCCCCC CCTCC
+4/500L3/4    36649  ID   H4H4H34H3H 4H4H3H3H4H 4H344HH3HH HH4HH
+4/1063C/G    37210  Tv   HGHGGCGGGG GHGGGGGGGG GGGGGGHCGG HHGGG
+701C/T       42851  CTi  HCCCCCCHCH HCCHCHHHCC THTCCHCCCH CCTCC
+876A/G       43026  Ti   HGGGHGGHHA ?GGHHAAHGH AAAH?HGGGH GGAGG
+1096A/G      43246  Ti   HGGGGGGHGH HGGHGHHHGG AHAGGHGGGH GGAGG
+2190C/T      44340  CTi  HCCCHCCHHT HCCHHTTHCH THTCCHCCCH CCTCC
+2378C/T      44528  CTi  HTTHHHTTTT TTHTTTTHTT TTTTTTHCTT THTTH
+2784A/G      44934  Ti   GHGHGGAGGG HHHGGGGGAG GGGGHGGGHG HGGHG
+2900A/G      45050  Ti   HGGGHGGHHA HGGHHAAHGH AGAGGHGGGH GHAGG
+3571C/T      45721  CTi  CHTCCHCCHC CHCHCCCHCH CHCTHHHHHC HCCHH
+3837C/T      45987  CTi  CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCC
+3955A/G      46105  Ti   HH?AAHAAHA A?AHAAAHAH AGAG??HHHA HAAHH
+3983A/G      46133  CTi  HHAGGHGGHG GHGHGGGHGH GHGAHHHHHG HGGHH
+3990A/T      46140  Tv   HH?AAHAAHA A?AHAAAHAH AHAT??HHHA HAAHH
+5053C/G      47203  Tv   HHHHCCHCHC HHCHCCCCCH CHHCHHHCHH HHCHC
+5683C/T      47833  Ti   HCTHHCCHCH HHHHCHHTCH TCHTHHHHHT HHCHC
+6085C/T      48235  Ti   HHHHHHTTHT TTHCTHHHTH HTCCHHCTTC HTTTH
+6139A/G      48289  CTi  HGHHAAHHAA HHHHHHHHAH HAHHHAGAHH HHAHA
+6195C/T      48345  Ti   CCCCCCCCCC CCCCCCCCCC CCCCCCHCCC CCCCC
+6211C/T      48361  Ti   HCCCCCCCCC CCHCCCCCCC CCCHCCCCCH CCCCC
+6236C/G      48386  Tv   HCCCCCCCHC CCHCCCCCCC CCHHCHHCHG HCCCC
+6260A/C      48410  Tv   CCCCCCCCHC CCCCCCCCCC CCHCCHHCHH HCCCH
+6485A/C      48625  Tv   CCHCCCCCCC CCCHCHHHCH CCHCCCHCHC CCCCH
+6630G/T      48770  Tv   .......... .......... .......... .....
+7445C/G      49585  Tv   HCC?CHCCCC ?CHHCCGCCC CCHHC?CCCG ?CCCC
+7982A/C      50132  Tv   HAAAAAAAAA AAHAAAAAAA AAACHAAAAH ?AAAA
+8965C/G      51115  Tv   GHHCCCHHGG HCGHHHHGGG GCGGHGGCHG HHGCG
+9177C/T      51327  CTi  HCCCCCCCCC CCHCCCCCCC CCCHCCCCCH CHCCC
+9595C/T      51745  CTi  HHHCCCCHHH HCCHCHHHCH TCHHHTTCCH ?CCCH
+9697G/T      51847  Tv   HHHTHTHHGG HHHHHHHGGG GTGHHGGHHH TTHTG
+3/341A/T     61494  Tv   TAHHAHHHHT HHTAHAHTTH HATHHHHAAT HTTAT
+3/663C/G     61817  Tv   HHCHHGHHHH CCHHGCHCGH CHHCCCCHHG CGGHG
+3/849C/T     62003  CTi  TTTTTHTTTT TTTTTTTTTT TTTTT?TTTT TTTTC
+3/1035A/G    62189  Ti   GHGGGAGHGG GHHHHGHGGG GGHGGGGHGA GGGHG
+3/1239C/G    62393  Tv   HGHGGGHHHC HHCGHGGCCH HHHGGHHHGG HGCGG
+3/1248A/G    62401  CTi  HHHGGHHAHA HAAHAGHAAH HHAGGHHAGH HHAHH
+35/1652C/G   62931  Tv   .......... .......... .......... .....
+35/2287A/G   63568  CTi  .......... .......... .......... .....
+35/2637A/G   63917  CTi  .......... .......... .......... .....
+35/3390C/G   64671  Tv   .......... .......... .......... .....
+35/4673A/G   65954  Ti   .......... .......... .......... .....
+35/6219C/T   67500  Ti   .......... .......... .......... .....
+35/6445C/T   67725  CTi  .......... .......... .......... .....
+35/6978A/G   68259  Ti   .......... .......... .......... .....
+5/507A/G     69507  Ti   HGHGHGHHHH GGHHAHGGAA HHGGG?HHGG GGAHH
+5/772G/T     69772  Tv   GGHH?HHHHH GTHHTHHHTH GGGGG?GTGG GTTGG
+5/934A/C     69935  Tv   ACAHHAHAHA HAAAAAHAAA AHHCC?HACC HAAHH
+35/375A/G    71375  CTi  .......... .......... .......... .....
+35/520C/T    71520  Ti   .......... .......... .......... .....
+35/801C/T    71801  CTi  .......... .......... .......... .....
+35/939A/G    71939  CTi  .......... .......... .......... .....
+35/151A/G    72151  CTi  .......... .......... .......... .....
+35/329A/G    72329  CTi  .......... .......... .......... .....
+7/1400C/T    78440  CTi  .......... .......... .......... .....
+7/1593C/T    78633  CTi  .......... .......... .......... .....
+7/1985A/G    79025  Ti   .......... .......... .......... .....


References:

Kalaydjieva et al (2001) European Journal of Human Genetics 9:97-104

Sajantila et al (1985) Genome Research 5:42-52

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Last updated: 8 September, 2005
Celia A. May
The views expressed in this document are those of the document owner, Celia A. May.