LMP7-TAP2 SNP allele frequencies

Determined from a survey of 60 UK Caucasian chromosomes.

The position of each marker is given, where position 1 corresponds to base 112,741 in the MHC class II sequence of Beck et al. (J. Mol. Biol. 255, 1-13, 1996) (EMBL accession no. X87344).

 

Marker   Position    Allele  Freq.    Allele  Freq.

T1          263        G     0.58       T     0.42
T2          410        C     0.57       T     0.43
T3         1254        C     0.57       T     0.43
T4         1966        T     0.62       A     0.38
T5         1996        G     0.92       A     0.08
T6         2033        C     0.53       T     0.47
T7         2040        C     0.53       G     0.47
T8         2536        G     0.62       A     0.38
T9         2699        A     0.62       C     0.38
T10        2901        C     0.57       T     0.43
T11        2909        G     0.62       A     0.38
T12        3024        T     0.52       C     0.48
T13        3094        G     0.57       A     0.43
T14        3366        A     0.52       G     0.48
T15        4017        G     0.63       C     0.37
T16        4180        G     0.75       A     0.25
T17        4438        A     0.65       G     0.35
T18        4553        C     0.52       T     0.48
T19        4578        C     0.60       T     0.40
T20      4606-8      TAA     0.58     CAG     0.42
T21        4689        C     0.67       T     0.33
T22        4800        A     0.90       G     0.10
T23        4917        C     0.67       T     0.33
T24        4934        T     0.63       A     0.37
T25        5073        C     0.70       T     0.30
T26        5106        T     0.98       A     0.02
T27        5188        G     0.50       A     0.50
T28        5203        C     0.50       T     0.50
T29     5268-70      CTC     0.57     ATT     0.43
T30        5417        A     0.90       C     0.10
T31        5647        C     0.58       T     0.42
T32        6079        A     0.93       T     0.07
T33        6667        G     0.55       A     0.45
T34        6680        G     0.82       A     0.18
T35        6772        +     0.92       -     0.08
T36        7136        A     0.90       G     0.10
T37        7284        A     0.52       C     0.48
T38        7478        G     0.88       A     0.12
T39        7739        +     0.52       -     0.48
T40        8616        G     0.87       A     0.13
T41        9075        G     0.92       A     0.08
T42        9263        G     0.85       T     0.15
T43        9564        A     0.87       G     0.13
T44        9642        A     0.92       C     0.08
T45        9814        C     0.85       T     0.15
 

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Last updated: 8 September, 2005
Celia A. May
The views expressed in this document are those of the document owner, Alec J. Jeffreys.