Genomics, Molecular Cytogenetics, Chromosomes, Genome Organization, Cells and Systems Biology
Pat Heslop-Harrison and Trude Schwarzacher, Department of Biology, University of Leicester, LE1 7RH UK.
www.molcyt.com E-mail: PHH4(a)le.ac.uk & TS32(a)le.ac.uk Phone: +44/0 116 252 3381; FAX: +44/0 116 252 3330

New March 2010 - Crocus and the Saffron
Graduate Course on Molecular Cytogenetics and Chromosome Analysis
Previous: Darwin and Chromosomes: Lectures from Brazil (see News below)
Publication List and Abstracts Update

Link to Previous News Stories from this page

March 2010 Crocus in the news

The EU Project Crocusbank was highlighted at the University of Leicester Botanic Gardens Crocus Days.

Focus on the crocus - Leicester's internationally acclaimed genetics research involved in European project into saffron production.

Details are presented in our news story - Focus on the Crocus

Photographs of posters and gardens are here:

Phh7313 – Richard Gornall (Centre_ and  Pat Heslop-Harrison (Right) Discussing Crocus Origins With David Watkin (left, Chair of the Friends of the Botanic Garden)
Phh7331 – Crocus flowering under Japanese maple in the Botanic Gardens, University of Leicester
Phh7329 – Crocus flowering in the Botanic Gardens, University of Leicester
Dsc2549 – Crocus vernus flowering in Italy

Saffron flowers

Synchronization of Oscillations

New work published in February 2010 shows that weak coupling between cellular oscillators can lead to rapid synchronization. With such a strong effect, there is often no need for cellular processes to be connected to any centralized or controlling clock.

See the work with colleagues from Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST) in Journal of Cell Science

Kim J-R, Shin D, Jung SH, Heslop-Harrison P, Cho K-H. 2010. A design principle underlying the synchronization of oscillations in cellular systems. Journal of Cell Science doi: 10.1242/jcs.060061 (password for this link only)

A movie film shows the induction of synchronization by the interactions.

Biomass Gene Locations (QTLs) Identified in Ryegrass

Olli Anhalt, who completed her PhD working with Susanne Barth at TEAGASC, Ireland, and in Leicester, has identified a major QTL for fresh and dry weight which explains around 30% of the phenotypic
variance in a large field experiment involving 360 F2 plants. The discovery of loci with such huge genetic effects is very important for understanding how to increase yield of grasses and biomass crops more generally. The full results are in: Anhalt UCM, Heslop-Harrison JS, Piepho HP, Byrne S, Barth S. 2009. Quantitative trait loci mapping for biomass yield traits in a Lolium inbred line derived F2 population. Euphytica 170: 99-107. doi: 10.1007/s10681-009-9957-9

(first link needs password, second needs subscription)

Pat Heslop-Harrison, Trude Schwarzacher and the Molecular Cytogenetics and Plant Cell Biology Group study the biology of the cell nucleus: its spatial and dynamic organisation or architecture, the function and interactions of its components, and the nature, evolution, expression, recombination and segregation of the DNA sequences within the nucleus at interphase, mitosis and meiosis. We look at repetitive DNA and its evolution, with a particular focus on tandemly repeated satellite sequences and retrotransposons. We look at the biodiversity of genes, particularly in crops, and those related to pathology and disease resistance, sustainability and consumer traits, and abiotic stress and have interests in sources and uses of genomic mutations. Key methods include molecular cytogenetics, DNA sequence analysis and systems biology approaches. Taking a comparative genomics approach, we have interlinked projects with a range of different species: a particular focus is on plant crop species (banana, cereals including wheat, rye and barley, Brassicas, Saffron Crocus and Pea/Groundnut), while important projects include work with Dictyostelium and E. coli, Drosophila, Scallops (Pecten), and bovids. We have a number of projects on germplasm utilization in plant breeding.

ECA course in Nimes 2010 - Plant Molecular Cytogenetics slides here (11MB large PDF - wait for download).

A paper on "Biology and Engineering: Coming Together in Systems Biology" was presented in Korea (link on title opens 8MB PDF of my talk). Video-on-demand VOD of my talk is at http://www.eimbl.org/club.intro.seminar.list.screen?p_cate=35

A paper on Genomics, Economics and Bananas was presented at the OECD meeting on Tropical Fruits in November 2008 (indirect link).

Related websites: www.SBLab.org for our Systems Biology work.
www.BioAstral.com for our spin-out company involved in hyperspectal quantitative imaging.
www.CrocusBank.org for information about a new EU project on Saffon Crocus and its relatives

Link to PubMed database and paper downloads (click on 'page' icon next to title).
Downloads of recent lectures, including one on banana and genomic sequencing with new preliminary results on heterozygosity, and other information is available from http://biobanana.diinoweb.com/files/ .

The group has four major aims: Research on the fundamental biology of the genome Application of research in crops and animals of importance to tropical agriculture Development of novel technology for biological research Technology transfer and training in the approaches we use. Note about images on this site: all non-acknowledged images are (c) Pat Heslop-Harrison/Trude Schwarzacher and colleagues, and were first published on this site. They may be reproduced for non-commercial uses provided acknowledgement is made and the website www.molcyt.com is mentioned, and preferably sending copies of any publications to Pat Heslop-Harrison. Please contact phh4(a)le.ac.uk for high resolution images or commercial uses. Images have been used in many major textbooks, calendars and in teaching. Much work focuses on the large-scale composition, methylation, expression, structure and function of repetitive DNA motifs that make up the majority of most animal and plant genomes. A particular area of interest is the behaviour and evolution of retroelements and pararetroviruses. We are developing systems biology approaches to understanding gene and genome interactions in model systems.

Our molecular cytogenetics lab is in the Adrian Building of the University of Leicester. It includes the major wet-lab and informatics areas, with two air conditioned fluorescent microscope rooms, equipment and cold rooms across the hall. This photograph is taken from outside the staff offices.

We use a combination of genetic, molecular and cytological methods - molecular cytogenetics - including in situ hybridization (hybridisation), fluorescence microscopy, electron microscopy, flow cytometry, DNA microarray and oligonucleotide hybridization. supported by development and application of modelling and structural/mathematical techniques as well as molecular biology. Repetitive DNA in the genome is important for evolutionary, genetic, taxonomic and applied studies, providing polymorphic markers. Repetitive sequences include microsatellites or simple sequence repeats, retrotransposons and retroelements, genes, and tandemly repeated elements.

Our work is important in showing the evolution and interaction of the majority of sequences in the genome, and their physical and functional relationships. The unifying aim of our work in terms of fundamental biology is the understanding of the dynamic and functional architecture of the cell nucleus, leading to an integrated structural, physical and functional map of the genome.

A lot of this fundamental work is directed towards applications in biodiversity studies, phylogenetic and evolution, and for uses by plant breeders, particularly in agriculture of subsistence and smallholder farmers. For example, plant breeders need to know about how evolution occurs, the diversity that is available to them, and how genes recombine and are involved in generation of somaclonal variation and functional genomics. Our work with mammals and insects has veterinary and medical implications.

Practical In situ Hybridization - Schwarzacher & Heslop-Harrison 2000 is available easily from Amazon.co.uk (second hand only from Amazon.com). Price Euro€/US$70, GBP£38, JPY10,500

The current projects are within the University of Leicester. As part of cell biology, our interests include the RNA and proteins located within the nucleus, and their temporal and spatial relationships. We take a comparative approach to genome analysis, investigating many different species to find universal and species-specific features of genome organization. In animals, we work with the Bovideae, rodents and some insects. Within plants, we work with the Gramineae (wheat, rye, barley), Chenopodiaceae (sugar beet), Palmae (oil palm), Pinaceae (pine, spruce), Leguminoseae, Iridacae (Crocus), Cruciferae (Brassica and Arabidopsis), Musaceae (banana). In systems biology, we use Dictyostelium models.

Pat Heslop-Harrison is Professor of Molecular Cytogenetics and Cell Biology at the University of Leicester. His interests include genetic diversity, crop evolution and breeding. Pat Heslop-Harrison moved from the Karyobiology Group, John Innes Centre, Norwich UK in October 2000. Trude Schwarzacher is Lecturer in Molecular cytogenetics in the University of Leicester. She moved from the Cereals Department, John Innes Centre in January 2001.

To assist indexing programmes, this home page is designed to be key-word rich, and variant spellings are used (e.g. organization/organisation, labelling/labeling, hybridization/hybidisation).

www.molcyt.com - index.htm